cytoself
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royerlab
Self-supervised models for encoding protein localization patterns from microscopy images
I need to align my own protein photo, but I cannot get the manual picked index the same as in the original paper. How can I do my own prediction...
Hello, when attempting to use the demo py file I get an error that the modules " cytoself.data_loader.data_manager import DataManager from cytoself.models import CytoselfFullModel from cytoself.data_loader.data_generator import image_and_label_generator from cytoself.analysis.analytics...
Dear Author, I tried reproducing the steps from the readme file, but I received an error. at step 2 the line trainer.fit(datamanager, tensorboard_path='tb_logs') throws the following error: PicklingError: Can't pickle...
Hi, I've installed cytoself via cloning from this repo / dev instructions and tried running the example scripts but ran into this error.  
Dear Author of cytoself, I got an Error when I run preparing Data on cytoself such as Attach file I send with this email. Could you please give suggestions for...
Hi! Thanks for sharing the preprocessed data. I was wondering if you also have the segmentation for the images at their original resolution instead of these downsampled ones. That would...
Hi, I had a question about the optimal weighting of the losses during training. I notice that initially if you weigh the fc loss, vq_loss, and reconstruction loss equally, the...
When running below line from colab tutorial (currently running in jupyter notebook) analytics.plot_clustermaps() I get the following errors. Please let me know how to resolve it. Thanks! --------------------------------------------------------------------------- ValueError Traceback...
