rentrez
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ropensci
talk with NCBI entrez using R
#156 was not completely fixed. The static timing works as long as there is only one R process per IP or per API key. If multiple users use `rentrez` without...
I am trying to run entrez_search for rettype = "count" and received an error that `Error in ans[[1]] : subscript out of bounds`. I did some debugging and see this...
Dear `rentrez` maintainer, I enjoy `rentrez` quite a bit and I suggest to improve an error message to make it even more awesome: The code below works fine (if NCBI...
Dear `rentrez` maintainer, With the Issue I try to seduce you to show the full URL (i.e. API call) in the error message. This would be useful when the NCBI...
Hi, I was wondering if anyone might have a suggestion to return the DOI for a given pubmed id in a robust manner? I tried to use the id converter,...
https://github.com/ropensci/rentrez/blob/master/README.md#web_history-and-big-queries While it is stated that 'When I wrote this that was a little over 200 000 SNPs', I have got the following messages: ``` > snp_search snp_search Entrez search...
(tagging @Monty9 and @htc502 on this as they've each brought i up recently) The query syntax used in esearch (and wrapped in `entrez_search`) is very powerful, but somewhat difficult to...
Hi rentrez developers, I have a situation where i want to search for a taxa and specific gene, and only download a random subsample of these search results. ``` search_results
I am trying to analyze around ~100,000 PubMed case reports and tried to get the data using entrez_fetch as shown below: `for(i in seq(1,10000,25)){ info
I'm trying to access a really large number of records (10,000 to be exact) and used the tutorial to try and attain this. So, I run the following code, first...