rentrez

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`entrez_fetch` returns multiple records from the `nuccore` database when given one ID

2

Thanks for making this package! It’s a huge help. After a lot of successful use, I’m finding some very strange behavior. Basically when I try to fetch nucleotide data for...

ajrominger

I have been trying to extract the SNPs associated with a list of genes and I would like to use GRCh37 as my genome assembly. Is there a parameter that...

NavXav

`parse_pubmed_xml` erases sections/header labels in PMC abstracts

2

When extracting abstracts from Pubmed, the section headers/labels are erased entirely and not present anywhere in the resulting objects or inlined. This makes abstracts substantially harder to read. They should...

gwern

peterscott1980

Hi! I am quite troubled with big queries in pubmed. The problem is as follows: I try to use entrez_fetch to extract parsed xml file as I need it to...

thdiakon

Minor code cleanups

1

This is intended as a "Thank you for making the package!" Hopefully it is helpful. When looking at the bottom of entrez_search.r, I noticed a bit of what appeared to...

billdenney

In my use case, I need to create a complex query that will likely require creating many smaller queries first and combining them with a web_history. (Specifically, I'm doing a...

billdenney

I learned a bit more about web_history earlier tonight, and I learned how to use it in #163. As I was thinking about the argument, I think it would be...

billdenney

This fixes #163. It causes `entrez_search()` to use HTTP POST instead of GET for all calls. This doesn't appear to have a downside, and all tests passed. I did not...

billdenney

HTTP failure: 500

2

Hi, Thanks for developing rentrez R package, which prove to be powerful in integrating NCBI database in R programming. I have personally prepared a custom command line R script that...

SuzeMa