rentrez

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Web history object - No esummary records found in file

6

Hi, I am trying to download all available bat coronaviruses. I used the following query: bat_cov_ids

d-caraballo

Get PubMed metadata from large amount of articles

3

I have a few questions regarding this tool. I have a query that results in 124 575 hits with `pubmed_search

LauraVP1994

how to get protein feature information

3

I tried to extract the protein feature/domain information, such as domain position and domain name, from https://www.ncbi.nlm.nih.gov/gene/5925, see below image as well, would you advice me how to extract such...

tangwei1129

How to download large Clinvar tabular table

2

Dear Sir Now I am working project to search a lot of variant data in Clinvar which is time consuming because it seem that Clinvar limit 20 queries per search....

manburst

Inconsistent behaviour and unnecessary warning when entrez_link called with single ID and by_id = TRUE

1

Thanks for developing rentrez, it is excellent. The man page for `entrez_link` says when `by_id = TRUE`, a list of `elink` objects will be returned, one for each ID in...

johnomics

Making entrez_fetch output accessible in R

3

Hi! Thanks for your nice package for communicating with NCBI in R. I have a list of transcript accessions, of which I want to extract the GenBank entries. My list...

ellalalalalalala

HTTP failure 414 (the request is too large) even with entrez_search(use_history = TRUE)

9

Hi there, great package! Maybe I am missing something here, but is my request really too large to run even with the `use_history = TRUE` argument in place as suggested...

SchmidtPaul

When `args$id` is present as input to `make_entrez_query()` (e.g. from `entrez_post`) the IDs are collapsed to a string (length = 1) before `args$id length > 200` is used to determine...

allenbaron

Suggest: more helpful error message for entrez_search with high retmax value

4

Dear `rentrez` maintainer, Thanks (again!) for the awesome package. Here I submit a feature request and suggest a more helpful error message. `rentrez::entrez_search` usually works fine, also when there are...

richelbilderbeek

Hi, I am trying to use rentrez to get the run info from a large number of SRA runs. I have worked out that I will need to use entrez_post...

JonathonMifsud