Roman Grothausmann

> > > These changes make sense. Thank you for your time. Potentially we could add a linter to this project. I can merge this but it would be much...

Here it is. Checkout https://github.com/romangrothausmann/elastix_scripts at 3269906 (branch reg2tra+prevTra) and change into tests/recRegStack/ (https://github.com/romangrothausmann/elastix_scripts/tree/3269906cadcb12130298535f14cc9f8bf26a71ce/tests/recRegStack) and try this MWE.py: ``` import SimpleITK as sitk fI= sitk.ReadImage("reg/2016_12_02_0101_s00_08.tif") mI= sitk.ReadImage("2016_12_02_0101_s00_09.png") selx=sitk.ElastixImageFilter() selx.LogToFileOff() selx.LogToConsoleOn()...

Many thanks @kaspermarstal for looking into this. I gave SimpleElastix@648a0f01 a try but it seems to me that it still uses Elastix@5df7a7787 (https://github.com/SuperElastix/SimpleElastix/commit/555c73fe81aa5f685b376164facd8f33342332a0#diff-05d9a8114b8b2c2e3ee208209d415276R5) which does not include the fix in...

@kaspermarstal, noticed You did some more integration lately, so gave it another try with v1.0.1 and the develop branch. They compile all fine now, but the segfaults during execution remain....

Many thanks @kaspermarstal for the update. Sadly the segfault problems still remain. Did the MWE.py from above work for you when you ran it in branch "reg2tra+prevTra" (https://github.com/romangrothausmann/elastix_scripts/tree/reg2tra+prevTra)? You could...

@kaspermarstal so do the MWE or the tests not segfault for You? Otherwise I would not say the issue should be closed since the problem is not yet resolved.

It seems `TransformixImageFilter` suffers the same problem. At least it also segfaults if `InitialTransformParametersFileName` is specified when using `stfx.SetTransformParameterMap` (see commit 19fdb19 referenced above). @kaspermarstal should I open a separate...

That I would be very thankful for! This is really giving me hard times for realising reliable manual intervention during registration of image series.

Hm, I'm not sure but could this problem be related to https://github.com/SuperElastix/SimpleElastix/issues/119#issuecomment-412095132?

Haven't been on this for a while and can't remember if I actually tested this with the new master before the issue was closed the first time, sorry. One reason...