rob234king

assembly half the size it should be and low N50

7

I have a fungal genome 30.5Mbp size and reduced nanopore coverage to 70X after filtering. I've filtered for at least average quality 16 and 3000bp read length. I take that...

medaka smolecule concurrent.futures.process.BrokenProcessPool

4

**Describe the bug** When I run medaka smolecule I often get this error, a few data sets work but usually its this error. 2 of the 20 samples I have...

hard clipping around large indels, parameter suggestions

4

I am mapping telomere containing reads in which the reference may have a large indel right at junction of telomere and non-telomere sequence and the reads are getting hard clipped...