rob234king
rob234king
[AssemblySummary.zip](https://github.com/chanzuckerberg/shasta/files/9243210/AssemblySummary.zip) We reached our disk quota so I couldn't make a zip file, fixed it now.
I haven't a metric for how heterozygous it is, can you recommend a tool for that. I've just looked in IGV to see how different the two haplotypes are. There...
My reads should have a 2% error profile and genome appears very heterozygous but should have 30.5Mbps per haplotype
Thanks for doing that and taking the time. I'm on leave but will try it out next week. Get Outlook for Android ________________________________ From: cjw85 ***@***.***> Sent: Thursday, August 11,...
I don't get the error if I split the files up to 100 pieces then run medaka on each. So got a workaround at least.
actually no this is still failing for some files with that future error even chopping up the input. For one set of data it went through fine. now I'm trying...
It can be either depending upon subtelomere but typically I see a deletion in relation to the reference. Largest is 2kbp but most are below 500bp.
Could you please share an email and I'll forward on some more detailed information with screenshots?
if run from the folder location of the installation then it will find the snakefile and put the output into the same folder too.