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                                            rnfinnegan

WIP Visualisation overhaul

updated ImageVisualiser

Work on animation code

support matplotlib>3.4

Automate image visualiser window settings

Improve interactive functionality for ImageVisualiser

It works without contours/overlays. Would be nice if these could be included. Need to pre-compute views to enable real-time interaction.

Fix arrow direction for vector plots when origin is non-standard

Some images (especially MRI) have different direction matrices, and so the origin needs to be set to reverse when visualising. The quiver plot needs to be modified to reflect this.

DICOM crawler

TO DO implement some integrity checks

Documentation error (compute_apl)

The docstring states "The total (slice-wise) added path length in mm" is returned, but the output is returned in units of voxels. Note - this function is not intended to...