patRoon

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Memory usage for generateMSPeakLists()

1

Hi @rhelmus, I am experiencing a memory usage issue when running the `generateMSPeakLists()` command: `mslists

akogler

Linking parents and TPs... Error generating the `precursor` object

2

Hi, I hope I can get some help with this. I've been trying to run Non-target screening of predicted TPs. when I run this part of the code adapted from...

chirsir

FindFeatures issue with example data

1

Hi, I am just trying to follow the patRoon tutorial and keep getting the following error (below) when I run "findFeatures" with the patRoon example data. Have I loaded something...

kbrigit

parallelism and timeouts errors

6

`patRoon 1.2.0` As part of my analysis, I was getting random errors while executing this line: ``` formulas

gilcu3

featureGrouping error

4

patRoon 1.2.0 xcms 3.8.2 Hi Rick I was analysing 350 samples (~70GB) w/ xcms3. During feature grouping (method: PeakDensity) I received this error message: Error in result_bind(res@ptr, params): long vectors...

stolltho

Hi again, this time for a feature suggestion rather than a bug: It would be nice to also to be able to sweep/optimize the xcms3 MergeNeighboringPeaksParam() parameters of the refineChromPeaks()...

tew42

Naming of filter function

3

Hi Rick, I have another issue. I suggest to rename the filter function of patRoon. The naming interferes with the tidyverse filter function and causes errors, if not called explicitly....

tsufz

Hi, first off, thanks for your nice code package, I switched over after having some issues with IPO. The comparatively verbose output is particularly useful! This made me notice an...

tew42

Error: plotVenn() with featureGroupsComparison

6

Hi Rick, I was trying to visualize the results of different feature finding approaches with `plotVenn()` but got an error I don't understand: ```r > comp = comparison(fGroupsPO, fGroupsXCMS, groupAlgo="xcms3")...

LeonSaal

Request: Reduce cache size

2

Hi Rick, do you think it is possible to reduce the size of the cache file during filling of the cache? It blows up quite quickly and clutters my harddrive....

LeonSaal