rezarahman12
rezarahman12
Dear xpore team, I have downloaded xpore paper's dRNA-seq data consisting of fast5 (ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR470/ERR4706254/HEK293T-Mettl3-KO-rep1.tar.gz) and basecalled fastq files (ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR470/ERR4706158/HEK293T-Mettl3-KO-rep1.fastq.gz) from . Then, I ran a job using nanopolish with the...
Hi, I have downloaded the fast5 files of the xpore paper from ENA. HEK293T-Mettl3-KO-rep2.tar.gz is downloaded using the below command- wget ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR470/ERR4708848/HEK293T-Mettl3-KO-rep2.tar.gz then I ran the command tar: -xvzf HEK293T-Mettl3-KO-rep2.tar.gz...
Hi there I would like to thank you for developing this beautiful program to analyze nanopore dRNA-seq data. I started from raw data processing before running the xpore, which I...
Hi Jared, Hope you are doing well. It is not an issue but a query as I'm a bit novice in Linux systems. Previously, I ran the nanopolish on a...
**Describe the bug** Dear Nanocomopore team (@lmulroney), Thank you for this very useful software. This is not an issue rather help is needed to run the nanocompore's sampcomp. **My script...
Dear pycoQC developer team. Thanks for building this nice tool. My problem is not an issue rather a help on the output file obtained through pycoqc. I generated html file...
Dear xPore team, I have run xpore on HEK293T-WT-rep1 and HEK293T-Mettl3-KO-rep1. I wish to compare my output diffmod.table and majority_direction_kmer_diffmod.table files with yours. Could you share the raw xpore results...
Dear xPore team, I've downloaded all the processed files of xpore paper's from Zenodo website, https://zenodo.org/record/5707193#.Y3rL9n1Bw2w. I found a file "Homo_sapiens.GRCh38.cdna.ncrna_wtChrIs_modified.fa". Does this file was modified to include cDNA, and...
Dear Nanocomopore team, Thanks again for this wonderful tool. I have tried loading the nanocomopore SampComp output file outSampComp.db.dat Below is my code- # Load database db = SampCompDB (...
Dear Kevin (@kevinblighe) Thank you for developing Enhanced volcano plot package. I would like to ask for a favor on this. I want to thin the x-axis and y-axis lines....