Jesse Connell

icon indicating a website link https://www.ressy.us icon indicating an email [email protected]

icon company University of Pennsylvania icon location Philadelphia, PA, USA icon location Bioinformatician at the University of Pennsylvania

Results 4 issues of Jesse Connell

PairwiseAligner behavior mismatch versus documentation for 1.79

2 comment

### Setup I am reporting a problem with Biopython version, Python version, and operating system as follows: ```python >>> import sys; print(sys.version) 3.10.5 | packaged by conda-forge | (main, Jun...

SRA metadata not including BioSample attributes

4 comment

I thought I was missing some metadata in one of our own previously-submitted SRA datasets because it wasn't showing up in the CSV file, but then the SRA admins pointed...

enhancement

ID/DIV script can't recognize certain V IDs from the germDB files

2 comment

The `BU_DD` germline V files have a handful of entries with an "ORF_" prefix, and when the ID/DIV script tries to parse a V call that start with one of...

Use "dictionary" not "array" wording in config docs

3 comment

This change would just replace "array" with "dictionary" in this bit of the documentation on configuration: > If the configfile statement is not used, the config variable provides an empty...