Reshma
Reshma
Dear Team, Spectre produces bed file as an output. I used spectre for one sample. Output bed file contains 6 columns. What is 6th column? What is the interpretation, when...
Dear Team, I work on offline cluster. Best option for me to use bioconductor packages is to download singularity image of collection of bioconductor package and transfer it to my...
Dear Team, Can spectre detect abnormal karyotype? Thank you.
Dear Team, I am using latest version of Spectre. I know, Spectre has been optimized for CNV call >=100KB. I would like to use min_cnv_len=85KB or 90KB, so I can...
Dear Team, Thank you for developing awesome tool. I have one question regarding reported CNVs by Spectre. I was checking some reported CNVs in my dataset in the DGV database....
Dear Team, I have used sniffles merge to merge thousands of samples(.snf files). It seems to me, "sniffles merge" reports only those those variants, which have been called in majority...
Dear Team, I am using rna seq pipeline version 3.18. I have added module "tin" in the module list of RSeQC. tin.py is time consuming process(around 7 hours). Do you...
Dear Team, Can I use "haplotagged.cram" (output of wf human variation pipeline) as an input to "modkit entropy" ?
Dear Team, I am using verifybamid2 on ONT data. To run verifybamid , at first I convert cram file in to pileup format by using samtools mpileup( with -B option)....