KMC
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Fast and frugal disk based k-mer counter
Hi! I cannot seem to figure out how to get the standard output of kmc from a file created using `kmc_tools simple union`. I need to query the output files...
have no peak
Hi! I'm utterly new to the project, but wanted to build your tool for Apple ARM processors and seem to be hitting the following error: ```bash [16:52:36] g++ -Wall -O3...
1. Issue: when I run kmc ,it increase to 100%,and then stopped 2. command line is kmc -k55 -ci1 -m1000 -t120 -sr120 -fbam /data/map_res/trimmed-SK/P2.sorted.bam ./00-kmc-res/P2.sorted.bam ./kmc-tmp/ I have set such...
Hi, I am very confused about the use of the -ci parameter. In the first step, in order to obtain the specific kmers of each genome, I used KMC to...
Hi: friend I used code `kmc -t1 -m1024 -k31 -ci2 @input_files.txt output_kmc_canon ./` ,but ,however, an error is reported. My input file has 374 lines in total, and the error...
Hello, `std::thread::hardware_concurrency()` returns, when possible, the underlying hardware capability to run threads, which might not corresponds to the actual number of cores available to the process (through the use of...
I have an application where I need to count pairs of k-mers separated by a fixed distance. This is almost identical to K-mer counting where K=2k, the "only" change should...
Hi, I have two nodes in a cluster. In one node, running `kmc_tools` will be completed in a few minutes. But in the other node, running `kmc_tools` will be always...
I was looking to get information about a database without dumping it to a file and couldn't figure out how to do it from the help message of the kmc_tools...
