marcin p. joachimiak

**Name of the dataset** https://amp.pharm.mssm.edu/Harmonizome/dataset/GEO+Signatures+of+Differentially+Expressed+Genes+for+Diseases 18516 genes 233 disease perturbations 139800 gene-disease perturbation associations **Mapping or relevant fields** A clear and concise description of what which fields you would want...

antiviral drug table with drug stage in clinica

1

**Name of the dataset** Also includes a grouping of viruses but coarse https://drugvirus.info **Mapping or relevant fields** A clear and concise description of what which fields you would want to...

This will be an important complement to using embeddings since can quickly inspect common features underlying embeddings.

https://zenodo.org/record/3835696#.XyQYnfhKj6A from @egonwillighagen okay, plz have a look at this repository which has the code to download the data from @wikidata and the code that generates the @BridgeDbProject files. But...

investigate GeneWeaver expression data

6

Initially this is being done via a UI query and UI download but near term can be converted to GeneWeaver API calls: https://geneweaver.org/help/#api **Name of the dataset** GeneWeaver SARS expression...

### Describe the bug Graph learning edge set samples introduce new nodes not in the positive training set. Since the positive training set is what gets embedded, these other nodes...

ingest SARS-CoV-2 structural data table

4

From: https://covid19.bioreproducibility.org/ Some key pieces would be: - structure determination method (homology models would be from different source) - species - major ligand - structural ligands eg metal ions -...