Ryan Corces comments

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                                            Ryan Corces

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Error in h5read(x, paste0(useMatrix, "/Info/Units")): Object 'PeakMatrix/Info/Units' does not exist in this HDF5 file.

This does look like it could be a bug but as the message above says, we require reproducible examples. please make one with the tutorial data.

How to deal with dsciATAC data, it's about 50,000 cells per sample.

Hi @Goood2001! Thanks for using ArchR! I am currently on vacation and will not be responding to any issues or discussion threads until 5/5. Please make sure that your post...

addGroupCoverage kills the session

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simpleError in validObject(.Object): invalid class “DimReduc” object: dimensions for ‘cell.embeddings’ must be in order

Hi @danli349! Thanks for using ArchR! Lately, it has been very challenging for me to keep up with maintenance of this package and all of my other responsibilities as a...

SummarizedExperiment Error with import10xFeatureMatrix function

Hi @yojetsharma! Thanks for using ArchR! Lately, it has been very challenging for me to keep up with maintenance of this package and all of my other responsibilities as a...

Peak marker heatmap not sorted

Hi @alekseybelikov! Thanks for using ArchR! Lately, it has been very challenging for me to keep up with maintenance of this package and all of my other responsibilities as a...

addIterativeLSI error

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speed up addClusters

Hi @limiao20! Thanks for using ArchR! Lately, it has been very challenging for me to keep up with maintenance of this package and all of my other responsibilities as a...

`createArrowFiles` can't generate "QualityControl" plots

Hi @danli349! Thanks for using ArchR! Lately, it has been very challenging for me to keep up with maintenance of this package and all of my other responsibilities as a...

`addGeneIntegrationMatrix` Error in slot(object = object, name = "features")[[layer]] <- features: more elements supplied than there are to replace Traceback:

Hi @danli349! Thanks for using ArchR! Lately, it has been very challenging for me to keep up with maintenance of this package and all of my other responsibilities as a...