Robert Castelo

A case where rowSds() doesn't give zero where sd() does

5

Hi Henrik, I've found a case in which `rowSds()` is giving a value that is practically zero but not exactly, while base `sd()` gives exactly zero. This is at the...

Explain filtering variants and show its effects with the TS/TV ratio.

4

This is a contribution for the instruction training checkout. In this PR I would like to suggest to stress the importance of the step 3 of the variant calling pipeline,...

Use of the dgCMatrix container

4

Ensure that the `dgCMatrix` container for single-cell data can be safely provided as input to the gsva() function.

Unit tests for annotation features

3

Increase the percentage of test coverage of the source code, by writing additional unit tests.

Revise and update the GSVA vignette, using more recent datasets and use cases.

Ensure that the `SingleCellExperiment` container for single-cell data can be safely provided as input to the `gsva()` function.

Support for combining scores from directional gene sets

2

Following up [this conversation](https://support.bioconductor.org/p/9147536) at the Bioconductor support site, consider adding support to combine scores from directional gene sets.

prefetch error trying to run the docker container

4

hi, Looking up at the [server](https://dee2.io/huge/hsapiens) files for human, apparently, there have not been new samples added to the DEE2 pipeline since 2021. For that reason, I want to run...