Robert Castelo

ok, thanks, is the data sparse (more than 80% of the values) like if they were single-cell data?

Dear @cihanerkut yesterday we released a new version 2.0 of GSVA, see https://bioconductor.org/install for installation instructions, that includes a new function `gsvaEnrichment()` that will allow you to make GSEA-like plots...

Hi, sorry for my not getting back to you earlier, we're working hard towards the next release of the software, which should happen Wednesday 30th, next week, and this new...

Hi, a new version 2.0 of GSVA was released yesterday, please follow the instructions at https://bioconductor.org/install to install it, and let us know if this version addresses your feature requests.

Hi @abadgerw, 1. Could you post the code that causes the error? 2. No, this is not that simple, and in principle, you should not need to access the internal...

Thanks, I've just fixed the problem with `gsvaEnrichment()` in both devel and release, now version 2.0.1, which will become available in the next 24/48 hrs through the Bioconductor build system...

I cannot reproduce this, for instance, if do: ```r library(GSVA) example(gsvaEnrichment) gsvaEnrichment(gsvarankspar, geneSet=1) gsvaEnrichment(gsvarankspar, geneSet=2) gsvaEnrichment(gsvarankspar, geneSet=3) ``` the three different calls to `gsvaEnrichment()` produce three different plots. I need...

Hi Romina, thanks for reaching out, during the last two years the ssGSEA implementation has been optimized for speed and memory consumption, but results should be the same. In fact,...

Hi Romina, yes, it should give identical results, and it does. We introduced the new parameter-object based API in the release version of GSVA 1.50 (Bioconductor 3.18, see this [link](https://www.bioconductor.org/about/release-announcements)...

For me to help you figuring out exactly what is going on I would need to have the same input (expression data and gene sets) that you are using and...