Robert Castelo

Hi, thanks for attaching the data. Looking at it we see that actually most of the data are NA values, for instance: ```r dim(expr_mat) [1] 668 1281 naspergene

Hi, so, this is some kind of proteomics data, right? My perception is that the amount of NAs is massive at least in the dataset you attached. Typically for proteomics...

Hi, ok, I've opened a new issue, mentioned here above, to implement a missing data policy for ssGSEA. Thanks for the input. I'll let you know once this is part...

Hi @bobzimmermann-D4C we have implemented in the current devel branch of GSVA a first version of a missing data policy for ssGSEA. This is now available in devel version 1.53.4...

Hi @bobzimmermann-D4C I'm glad it's working as expected and thanks for pointing out the mistake in the code 🤦‍♂️ I've just corrected it 😅 one further question. My general understanding...

Excellent, thank you!! I'm closing the issue, but do not hesitate to open a new one if you encounter any problem or have any suggestion about the implementation of this...

Hi Johannes, Thanks for the hint, it looks like I have been able to correct that problem, but now I've stumbled into this other error: ``` createEnsDbForSpecies(ens_version=74, species="homo_sapiens", user="readonly", host="localhost",...

Hi again, ok, so I figured out that I can simply enter in the MySQL database and remove that stale database `homo_sapiens_core_74_37`. This seems to get me to the next...

Thanks, the suggestion about the port worked (the port in my case was `3306`), but I still get the error about "loading local data is disabled": ``` > createEnsDbForSpecies(ens_version=74, species="homo_sapiens",...

Hi, restarting the mysql server did the job, however, adding ``` [client] local-infile=1 ``` to the mysql configuration file at `/usr/local/etc/my.cnf` triggered the following error: ``` ERROR 1067 (42000) at...