Robrecht Cannoodt

Hi Friederike, The new version of dyno should be able to handle sparse matrices much better. Only the software of the individual TI methods might not support sparse matrices. Could...

@abhaduri You are likely having a different issue. There was a time where dyno was not forwarding errors generated within containers correctly, but this has since been fixed. Could you...

Hello @ch8316f5eyu and @alexQiSong! I currently have limited accessibility to my computer, but I'll take a look at this issue as soon as I'm back. Are you both using dyno...

Hello @ch8316f5eyu @alexQiSong @TTsien @KforKuma, Sorry for the delayed response. I'm failing to replicate the issue. Can you show me the output of the following code? ```r library(dyno) model

Oh dear. Could you perhaps send us the model_paga object as an rds, so I can try plotting it myself to see what goes wrong? Robrecht

Hello @Dongxu-Zheng ! Can you send me an example data object you wish to run with dyno? Kind regards, Robrecht

No need to send me the whole dataset, a tiny part of it is okay. You can send it to '[email protected]'.

> OK, now i'm hitting [this issue](https://github.com/dynverse/babelwhale/issues/19) from babelwhale: > > ``` > Error in save(config, file = config_file, compress = "gz") : > 'compress = "gz"' is invalid >...

> how can i assess whether my singularity cache is correctly set up? This looks OK to me. Yesterday I pulled all of the ti_* images by running the following...

> here is what i'm running, where MY_HOME_DIR is a full path: ```R config