Robrecht Cannoodt

We ran into this issue ourselves as well, in trying to create a Docker containing all dynverse packages required to run a TI analysis. As far as I know, it...

Hi @TJonCooper ! Could you provide a reproducible example for me to work with? Kind regards, Robrecht

Hello emH-20! This is because in Seurat the columns represent cells, whereas in dyno the rows represent cells. To solve your problem, you need to transpose your input matrix: ```r...

@davemcg I agree this is probably due to memory issues. I have made a few changes in the Slingshot wrapper in order to make it a bit more memory efficient...

[Yes,](https://github.com/dynverse/ti_slingshot/compare/7bbd578af4c38194ccfae801b1d0060d72d76816...master#diff-f5ca5fa7759a6edc0b89a6ec01d2cb81L38) version 0.9.9.01 of the ti_slingshot container will be more scalable with respect to the number of genes. This version is not yet merged to the master branch of dyno,...

The changes were merged to master :) It might take quite a while to run, but at least the memory consumption should be a lot better. Could you verify?

Could you try setting docker to the default runner? ```r library(babelwhale) config

Hello Celine! I'm truly sorry for the late response. We have been swamped with work, and I must have missed your issue. Could you update dynwrap and dynmethods? In all...

Hey Friederike! Thanks for trying out dyno. This is a known bug that I should really look into urgently. The first time you download a TI method, you get a...

Are you still at the conference? Do you have time at 8 to show me your problem?