spladder
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ratschlab
Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
* spladder version: latest * Python version: 3.10.10 * Operating System: core-4.1-amd64:core-4.1-noarch/Oracle Linux Server release 8.7 ### Description I did spladder build on one bam file by the following script:...
* spladder version:3.0.3 * Python version:3.9.15 * Operating System:20.04 ### Description I made a visualization of my splicing result by using below command ### What I Did spladder viz -o...
Hi, I have aligned files (mouse mm10 genome) aligned with STAR with .gtf files for annotation. Spladder requires .gff files. Can I use the corresponding .gff (same org. same annotation)?
* spladder version: 3.0.3 * Python version: 3.9.12 * Operating System: Ubuntu 20 ### Description I am trying to run SplAdder on 83 samples using the instructions for Use on...
Hello, I'm running Spladder under default settings, the graph was constructed successfully without any errors. However, the testing mode is crushed for 2 samples of my cohort. I'm already re-done...
* whichever version is on conda * 3.9 * Centos ### Description Hi, I am trying to visualize test results, here is my code ### What I Did ``` spladder...
* spladder version: 3.0.3 * Python version: 3.7.8 * Operating System: Ubuntu 20 I am trying to run Spladder on test mode with 6 sorted bam files divided into two...
* spladder version: 3.0.2 * Python version: 3.7 * Operating System: Linux ### Description I am using the spladder for large cohorts using the workflow described here: https://spladder.readthedocs.io/en/latest/spladder_cohort.html The events...
* spladder version:3.0.0 * Python version:3.7 * Operating System:Linux **### Description I installed the package on linux cluster using pip. Installation was successfull. Here is the full list of messages...
Following is my computer setup. CPU: i7-11700. RAM: 102GB I have around 200 tumor and 100 normal bams. I tried with the following command: `spladder test --conditionA tumor.txt --conditionB normal.txt...
