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Spladder test stuck

Open zyh4482 opened this issue 2 years ago • 2 comments

Following is my computer setup. CPU: i7-11700. RAM: 102GB

I have around 200 tumor and 100 normal bams. I tried with the following command: spladder test --conditionA tumor.txt --conditionB normal.txt --labelA tumor --labelB normal --parallel 8 --outdir ~/project/as -v

But it has been stuck for a few days. I have no idea what should I do. Part of the latest log is as below:

[################################################# ] 130087 / 130094 (100%) - to[################################################# ] 130088 / 130094 (100%) - to[################################################# ] 130089 / 130094 (100%) - to[################################################# ] 130090 / 130094 (100%) - to[################################################# ] 130091 / 130094 (100%) - to[################################################# ] 130092 / 130094 (100%) - to[##################################################] 130093 / 130094 (100%) - to[##################################################] 130094 / 130094 (100%) - took 10105 sec (ETA: 0 sec) Found dispersion fit Estimating adjusted dispersions.

Should I halt it and re-run the command? Or just wait? Is it the reason that my computer is low grade and does not fulfill computation expenses?

Thank you.

zyh4482 avatar Mar 17 '22 04:03 zyh4482