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Spladder test stuck
Following is my computer setup. CPU: i7-11700. RAM: 102GB
I have around 200 tumor and 100 normal bams. I tried with the following command:
spladder test --conditionA tumor.txt --conditionB normal.txt --labelA tumor --labelB normal --parallel 8 --outdir ~/project/as -v
But it has been stuck for a few days. I have no idea what should I do. Part of the latest log is as below:
[################################################# ] 130087 / 130094 (100%) - to[################################################# ] 130088 / 130094 (100%) - to[################################################# ] 130089 / 130094 (100%) - to[################################################# ] 130090 / 130094 (100%) - to[################################################# ] 130091 / 130094 (100%) - to[################################################# ] 130092 / 130094 (100%) - to[##################################################] 130093 / 130094 (100%) - to[##################################################] 130094 / 130094 (100%) - took 10105 sec (ETA: 0 sec) Found dispersion fit Estimating adjusted dispersions.
Should I halt it and re-run the command? Or just wait? Is it the reason that my computer is low grade and does not fulfill computation expenses?
Thank you.