ramnageena11

a new error is coming makeblastdb upgarde required

> I also had this issue, when using a conda (version 4.10.1) install into an existing environment. I found that if I created a new environment (i.e. conda create -n...

> You have to make sure you have BioPerl version 1.72 or above installed. Can you try updating/upgrading BioPerl? It seems the earlier recipes on Conda have a bug. Yes,...

i checked the Bioperl version is 1.007002 It did not updated how could i do that?

Now this msg came Current channels: - https://conda.anaconda.org/bioconda/linux-64 - https://conda.anaconda.org/bioconda/noarch - https://conda.anaconda.org/conda-forge/linux-64 - https://conda.anaconda.org/conda-forge/noarch - https://conda.anaconda.org/r/linux-64 - https://conda.anaconda.org/r/noarch - https://repo.anaconda.com/pkgs/main/linux-64 - https://repo.anaconda.com/pkgs/main/noarch - https://repo.anaconda.com/pkgs/r/linux-64 - https://repo.anaconda.com/pkgs/r/noarch To search for alternate...

okay, am trying

Hey andersgs, I think that worked but now [13:49:40] This is prokka 1.14.6 [13:49:40] Written by Torsten Seemann [13:49:40] Homepage is https://github.com/tseemann/prokka [13:49:40] Local time is Fri Apr 30 13:49:40...

(my_prokka_env) powersequence@CH-CB-POWERSEQ:~/prokka/bin$ prokka --setupdb Command 'prokka' not found, did you mean: command 'propka' from deb pdb2pqr

hi andersgs system got crashed. I am re-installing. will update. Thanks

Hi, Pls see and suggest. (base) powersequencing@CH-CB-RS-P5820:~$ prokka --version Can't locate Bio/Root/Version.pm in @INC (you may need to install the Bio::Root::Version module) (@INC contains: /home/powersequencing/anaconda3/bin/../perl5 /home/powersequencing/anaconda3/lib/site_perl/5.26.2/x86_64-linux-thread-multi /home/powersequencing/anaconda3/lib/site_perl/5.26.2 /home/powersequencing/anaconda3/lib/5.26.2/x86_64-linux-thread-multi /home/powersequencing/anaconda3/lib/5.26.2 .)...