figtree
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Setting the origin value does not change the axis, see attached screenshot (does not work when setting origin value to 360.0 either). Figtree v1.4.4, Mac 10.14.6.
Here what I have in the console: bash-3.2$ java -jar /Users/David/Desktop/FigTree_v1.4.3/lib/figtree.jar javax.swing.UIManager$LookAndFeelInfo[Metal javax.swing.plaf.metal.MetalLookAndFeel] javax.swing.UIManager$LookAndFeelInfo[Nimbus com.sun.java.swing.plaf.nimbus.NimbusLookAndFeel] javax.swing.UIManager$LookAndFeelInfo[CDE/Motif com.sun.java.swing.plaf.motif.MotifLookAndFeel] javax.swing.UIManager$LookAndFeelInfo[Mac OS X com.apple.laf.AquaLookAndFeel] objc[14294]: Class FIFinderSyncExtensionHost is implemented in both /System/Library/PrivateFrameworks/FinderKit.framework/Versions/A/FinderKit (0x7fff8c19eb68)...
I recently downloaded FigTree v1.4.2 onto my Mac and noticed a strange thing happening after I initially visualize a tree, save it, close the tree, and then open it back...
Select a number of node labels to be coloured and then click on the colour tab. When trying to alter any of the three values (or move the slider) there...
Hi, I was confused about these 4 parameters "node ages" "node height" "branch times" "branch lengths" in Figtree's display window, anyone could help to explain that, many thanks in advance.
The title should pretty much say it all. I have a tree and an annotation table, and when I try to collapse a branch which has been coloured by data...
``` > java -jar /opt/figtree.jar javax.swing.UIManager$LookAndFeelInfo[Metal javax.swing.plaf.metal.MetalLookAndFeel] javax.swing.UIManager$LookAndFeelInfo[Nimbus javax.swing.plaf.nimbus.NimbusLookAndFeel] javax.swing.UIManager$LookAndFeelInfo[CDE/Motif com.sun.java.swing.plaf.motif.MotifLookAndFeel] javax.swing.UIManager$LookAndFeelInfo[GTK+ com.sun.java.swing.plaf.gtk.GTKLookAndFeel] Gtk-Message: 15:10:53.483: Failed to load module "canberra-gtk-module" Exception while loading the ApplicationAdapter: java.lang.reflect.InvocationTargetException at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at...
Currently there is no way of knowing where the error is.
The build leaves ```figtreepanel.jar```, ```figtree-pdf.jar```, ```figtree.war``` in ```dist/```, in addition to ```figtree.jar```. Are they needed? They lack manifest. It appears that ```figtree.jar``` alone should suffice.
To have `figtree` in your `$PATH` you included a bash script that executes the `jar` file. Since there is no absolute path, it will not find `figtree.jar`. To avoid that...
