Prakki Rama
Hi Seeman, I downloaded few plasmids sequences in Genbank full format from NCBI for plasmid annotation and ran the following command: `prokka ENT2_Contig6_len_41186_circ_NDM-1_Plasmid.fasta --outdir PROKKA_05222020_with_AllNDM_plasmids --proteins All_NDM_Assigned_Plasmids_byMash_Plsdb.gb ` However, I...
Hi, Thank you for the amazing tool to filter recombination regions. May I kindly check, if the reference base in the vcf file is created based on the consensus from...
Hi, I have some identical sequences in my input fasta but still would like to keep them in my analysis and run gubbins. I have the following error in regards...
Hi Vipin, Thank you very much for the GFFtools scripts. However, when I run the command, `python gff_to_bed.py ref.gff3 > out2.bed` while converting gff3 to bed 12 format, I receive...
Hi Luke, Thanks for zellkonverter. I downloaded one of the h5ad objects from [here](https://figshare.com/ndownloader/files/23872460) and ran the following code in jupyter notebook. ``` # Main packages import scanpy as sc...
Hi, Thank you very much for this package. I have the following error when I run the tool using singularity. ``` $ which singularity /usr/local/bin/singularity $ singularity --version singularity version...
Hi, In the following code, when you have color column in the edges dataframe, the options hover and highlight does not seems work. Is there anyway to highlight the edges...
Hi, Thank you for the wonderful tool. I am looking for an option where I can select an edge between two nodes (A and B). The edge and two nodes...
**Describe the bug** Hi, thank you for creating a nice tool! I get the following error: ``` OSError: ZSTD decompression failed: Unknown frame descriptor ``` on running the following code...