Rahia Mashoodh

agat_sp_fix_longest_ORF.pl fails to produce gff

3

AGAT has been working great for me so far, so thanks. I'm trying to determine if the ORFs of my GTF are properly defined. Trying to work out if the...

estimate_richness fails -- Component taxa/OTU names do not match.

2

I know this issue has come up a bunch (e.g., here: https://github.com/joey711/phyloseq/issues/1018 and https://github.com/joey711/phyloseq/issues/552 - but I noticed its closed but with many people asking the same question, so I...

subsampling vs coverage thresholds

5

hi, thanks for developing this -- it looks really useful. I had more of conceptual question. In the popoolation manuals it always suggests subsampling pileups to create equal coverage. Is...