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qupath
QuPath - Bioimage analysis & digital pathology
## Bug report **Describe the bug** When using the `TileExporter`, pixel size and channel color information can be lost. **To Reproduce** Use the `TileExporter` class to export fixed-size tiles as...
Since it seems (from what I can tell) that all the commands within this menu work only on detections and not annotations, the submenu should be called Detection classification, so...
See https://github.com/qupath/qupath/pull/1496 and https://github.com/qupath/qupath/issues/1358 The workaround in v0.5 was to revert to JavaFX 20, but we don't want to be stuck indefinitely on an out-of-date version. There have been many...
## WHAT This PR improves performance when running a script that does not need to access the image files on multiple images. Additionally, allowed to modify `ObjectClassifierCommand` too so that...
Rough draft at an alternative approach to address the issue raised in https://github.com/qupath/qupath/pull/1488
Before submitting your bug report, please check the following: * [x] I've definitely found a bug (it you're not sure, please use [image.sc](https://forum.image.sc/tags/qupath) instead) * [x] I've checked https://qupath.github.io for...
Previously, we just assumed qupath extension releases would follow the convention `qupath-extension-[name]-[version].jar` (or similar, I can't really remember). This version uses the github API to poll for the latest release....
A proposal to fix #1527. It simply consists in reducing the size of the downsampled image by rounding down its width and height, instead of rounding it.
## Bug report *Describe the bug* At some downsample levels, images can display a 1 pixel-width black column on the right edge. *To Reproduce* 1. Open the [GTEX-12584-1526 image](https://brd.nci.nih.gov/brd/imagedownload/GTEX-12584-1526 )....