Quim

GenomeWorks fails to compile with CUDA 12

2

I'm trying to compile GenomeWorks using the lastest CUDA version, and there seem to be some breaking changes in thrust that generates some compilation errors, here are the errors reported...

Missing objects in python r2api

2

From comments in #9 Let's enumerate the missing objects: * [ ] eval * [ ] graph * [x] print * [x] flags * [ ] search * [ ]...

Create sphinx docs

2

We should document current methods and classes, and generate docs based on that. Probably sphinx is the best choice, it can be integrated with beta r2 website.

The C++ example in the README used a method (`getAlignmentCigar`) that does not exist. Update the example by using the correct C++ method. Additionally, the formatting of the "Important" notes...