seeksv

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Hi, I'm running into errors in the seeksv getsv step. When running "seeksv getsv sample.clip.bam $file sample.clip.gz sample.sv.txt sample.unmapped.clip.fq.gz" it gives: _'InputSoftInfoStoreBreakpoint' finished Bam/sam sample.bam Mean insert size : 182...

briarj

sam parse query name too long

1

Hi, thanks for the tool - looking forward to using it. It seems seeksv is using the full sequence as the sequence header/name in the getclip stage, and samtools is...

sdewell

Hi, is it possible to run seeksv with multiple threads? I could not find this option in the help and in the online material. I am running a job for...

luigra

it seems seeksv generates more somatic SVs than other callers - do you have any suggestion for applying filtering? thanks

chunlinxiao