Error BAM index

[briarj]

Hi, I'm running into errors in the seeksv getsv step.

When running "seeksv getsv sample.clip.bam $file sample.clip.gz sample.sv.txt sample.unmapped.clip.fq.gz" it gives: 'InputSoftInfoStoreBreakpoint' finished Bam/sam sample.bam Mean insert size : 182 Mean deviation: 71 'CalculateInsertsizeDeviation' finished [bam_index_load] fail to load BAM index. [main_samview] random alignment retrieval only works for indexed BAM files.

My orignal bam file is indexed, and I've also tried to index the generated sample.clip.bam but this did not help. Any ideas? Best,