Results 4 issues of qifei9

When an alignment has only 2 unique sequences after dropping duplicated tips, the optim.pml with `rearrangement = 'stochastic', 'NNI' or 'ratchet'` will run into error like: `cannot unroot the tree`....

I updated Phyml.pm to: - Fix issues #43 and #44. The previous commit aiming these two issues did not actually fix them; - Make it compatible to `-b (--bootstrap)` option...

Hello, Thank you very much for this great tool salmon. I currently have a question about how to use it for my data. First of all, the libtype should be...

when I click on a icon (not individual), the link always be opened in the current page. Could it be opened in new (background) page?