platipy
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pyplati
Processing Library and Analysis Toolkit for Medical Imaging in Python
Some images (especially MRI) have different direction matrices, and so the origin needs to be set to reverse when visualising. The quiver plot needs to be modified to reflect this.
Would be useful when training a 2D U-Net to visualise just the 2D slices
I think this will fix downloads from TCIA so that you're getting the latest datasets via our newer API. Once you confirm this works properly, feel free to close https://github.com/pyplati/platipy/issues/276...
In [transform_point_set_from_dicom_struct](https://github.com/pyplati/platipy/blob/master/platipy/dicom/io/rtstruct_to_nifti.py#L105C5-L105C42), each contour slice is associated with some location in the input `dicom_image` using the sitk function `TransformPhysicalPointToIndex`. The issue arises if the z coordinates of the input sitk.Image...
It looks like you're accessing https://services.cancerimagingarchive.net/services/v4/TCIA to access data from TCIA. We deprecated this version of the API in 2022 so you're pulling stale information in terms of the list...
The docstring states "The total (slice-wise) added path length in mm" is returned, but the output is returned in units of voxels. Note - this function is not intended to...
Failed to build nnunet, This error originates from a subprocess, and is likely not a problem with pip.
Make more explicit in logging during atlas part.
I keep getting this error saying a post processing file is missing for the cardiac segmentation sample. WARNING! Cannot run postprocessing because the postprocessing file is missing. Make sure to...
