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Issues running cardiac segmentation example in collab

Open haydon1999 opened this issue 6 months ago • 1 comments

I keep getting this error saying a post processing file is missing for the cardiac segmentation sample.

WARNING! Cannot run postprocessing because the postprocessing file is missing. Make sure to run consolidate_folds in the output folder of the model first! The folder you need to run this in is /home/haydon/.platipy/nnUNet_models/nnUNet/3d_lowres/Task400_OPEN_HEART_1FOLD/nnUNetTrainerV2__nnUNetPlansv2.1

I have tried running the example in collab as well as locally and am getting the same error. Any ideas how to fix this? Thanks so much.

haydon1999 avatar Aug 13 '24 12:08 haydon1999