Phillip Wilmarth

icon indicating a website link https://pwilmart.github.io/ icon indicating an email [email protected]

icon company Oregon Health & Science University icon location Portland, OR USA icon location Data analyst at OHSU proteomics core since 2003. My nuclear chemistry Ph.D. was from Glenn Seaborg's group, UC Berkeley (1988). Mastodon: @[email protected]

Results 6 comments of Phillip Wilmarth
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Annotated sequence peptide string

I don’t know if this might have some useful information: http://www.aosabook.org/en/matplotlib.html Happy Holidays! -Phil > On Dec 21, 2021, at 3:44 PM, Wout Bittremieux ***@***.***> wrote: > > > To...

MSConvertGUI - Raw files are identified as corrupted

Hi, See these installation instructions for setting up MSConvert (there is a similar process for Comet): https://github.com/pwilmart/PAW_pipeline/blob/master/docs/MSConvert.md The script is not able to run MSConvert.exe so there is no output...

Reporter isotopic distribution for TMT

Hi Carlo, I do not have a mechanism for correcting for label purity. This limits the dynamic range some and that is not ideal. We mostly do SPS MS3 data...

Example analysis of LFQ MS/MS data

Hi Javan, I seemed to have missed your question. No, I do not have any MaxQuant MS1 feature intensity quantitative examples. I have made some progress off and on, but...

IRS on non-normalized summed signal / noise data

Hi, The promotion of S/N ratios for TMT data from the Gygi lab and its subsequent incorporation as the default in Protoeme Discovery is something I have unsuccessfully argued against...

Applying SL, TMM, and IRS on log2 data or raw data

Hi Lis, I don't work with log2 data because mathematical operations on logs are not the same as operations on non-logged values. For example, averages of non-logged values are simple...