Peter Van Dyken
Peter Van Dyken
> `logger.getLogger("snakebids")` is available anywhere, but they need to know that's the name of our top-level logger. I've definitely seen this type of thing in libraries before (just documenting the...
> Ah I guess my thinking here was that our desired default behaviour is just to print warnings, errors, and any non-log output via print (and then invoke snakemake with...
Okay, then for this PR, there were a few issues and inconsistencies that need to be dealt with, but I'll remove the handlers and marking everything that *should* be logged...
I will continue to keep the handler for the administrative tasks, however.
Should be fine, the only thing is we have a test for this, so it looks like we also have a false negative. A fix should also fix the test...
Sorry for leaving this so long... I'm just having another look at the docs building because of the test failure that came up on nightly. Just wondering, normal procedure for...
@Dhananjhay, are you able to finish this? `test_template_dry_runs_successfully` will need `uv` added as a test case. This will require updating the `test-template` container. You should be able to update the...
As mentioned, I'm really not sure how to make a _minimal_ example, as the appearance of this bug relied on having a significant peak in the very last index of...
All of the tests get messed up with the filesystem mock library, which is incompatible with pybids use of universal pathlib. I had started trying to remove the fs mock...
Supplanted by #466