Peter Van Dyken
Peter Van Dyken
Thanks for bringing this up! We've known internally about this for a while but haven't noted it anywhere public yet. I'll merge this for now. My preference will be to...
This is now supplanted by #477
It is possible to work around this using: ```py layout.get(**{"from": "space"}) ``` but it's a super awkward syntax.
If you're interested, I'm definitely able to implement this, but I likely won't have time in the near future
@johanneskoester This PR is ready for review. It's a fairly significant refactor, so its hard to fully predict the consequences in live environemnts, but all the tests pass at least....
> @pvandyken is this test here fixed along with your changes? #3367 Yes!
@nigiord Just ran a `git bisect`, this is the problem commit: 120836a (so this hasn't been working for a long time). Luckily the commit is quite simple, and I think...
@Dhananjhay Are you still working on this? We have discussed this in the past, I was hesitant to introduce too many things into the basic template, especially since test workflows...
> - Removes any broken or incomplete output files. This is already fixable with `--keep-incomplete`. > - Automatically deletes files that need to be regenerated. Snakemake tracks incomplete files in...
Just did some tests. Looks like shadow dirs are cleaned up in all cases. One could argue they should be kept for failed rules when `--keep-incomplete` is provided, the only...