ptth222

I was able to add "sphinx>=5.1.1" to the requirements.txt file and get pip to upgrade sphinx, so this is a decent work around for now I think.

This doesn't make sense to me. "Assay Name" is essentially just the "name" field for a process. Something like "plant height" should already be a "characteristic" of a source, sample,...

We have the same first need. There is an assay that measures the protein content of a sample, but it only has milligrams of protein as an output. I was...

@proccaserra Thank you for the detailed response. I apologize for double posting about some of this. I'm not familiar with all of the issues and was not aware of #511....

A small update. The JSON Schema for data_schema has the following types listed for data files: "Raw Data File", "Derived Data File", "Image File", "Acquisition Parameter Data File", "Derived Spectral...

I have found another inconsistency with the "Assay Nodes". The terminology gets kind of confusing here, so I am going to try and explain. In the specification, https://isa-specs.readthedocs.io/en/latest/isatab.html, in the...

I don't think there is a way to set the Python version with this action. Usually you could do something in the "with" options, but this action doesn't have a...

I had essentially the same error and fixed it using export JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.8.0_251.jdk/Contents/Home I did not try by using the new JDK 14.

I did an example more like what was discussed in the meeting. I had to also add tracking for the columns that are added for known protocol types. The problem...

I took a small break from what I got pulled away to work on to address the comments raised when we last met. I added comments and broke up _build_paths_and_indexes()...