Paolo Tosco
Paolo Tosco
@bp-kelley TL;DR: it will, but you need to call `PandasTools.RenderImagesInAllDataFrames()` upfront. ``` import pandas as pd from rdkit import Chem from rdkit.Chem import PandasTools PandasTools.RenderImagesInAllDataFrames() test_df = pd.DataFrame({"mol": [Chem.MolFromSmiles(smi) for...
Sorry for reviving this 2-year old ticket. I have just stumbled on the same problem on an internal dataset using the latest RDKit 2021.03.1 release. So I decided to reproduce...
Thank you for the super-fast reply, Dan! Looking forward to the PR.
Thanks Dan! It looks much better now :-) ``` %%time rdDepictor.SetPreferCoordGen(True) for m in chembl_mols_2000: rdDepictor.Compute2DCoords(m) CPU times: user 2min 5s, sys: 53 ms, total: 2min 5s Wall time: 2min...
@ZontaNicola I found another one in the same vein, again with a bridged system, in case you wish to check it against your fix: ``` from rdkit import Chem from...
@ZontaNicola Thanks for the super quick reply! Great to hear that, you are awesome!
@djcole56 Hi Danny, correct, those packages are not available through `conda`. * Qt5: the way I fixed the problem in my case was to use the CentOS 7 `ppc64le` version...
@syedzayyan Please submit a separate PR. Also, I'd recommend to make building ScaffoldNetwork support optional through a CMake switch (mapping to a preprocessor macro, such as `RDK_BUILD_MINIMAL_LIB_SCAFFOLDNETWORK`) in order not...
@syedzayyan I have submitted a PR against your branch with some suggested changes. 1. You do not need to check `d_rxn` against non-nullness as `JSReaction` cannot be constructed with a...
Release dates are reported here: https://github.com/rdkit/rdkit/milestones `conda` packages are published shortly thereafter. You did not provide a reproducible example causing verbose `rdDetermineBonds` output, so I am unable to test your...