Felipe da Veiga Leprevost

icon company Genentech icon location EUA icon location Biomedical Data Scientist

Results 148 comments of Felipe da Veiga Leprevost

OpenMS 3.2 Dockerfiles

Thanks for working on this. I'm particularly interested in building the images locally, is the v3.2.0 Dockerfile also available?

OpenMS 3.2 Dockerfiles

Thank you, I will pull them once they are merged.

OpenMS 3.2 Dockerfiles

Thank you again!

Training new models

Thanks! Can this be used for the training? [train_xgboost_c.py](https://github.com/compomics/ms2pip/blob/releases/train_scripts/train_xgboost_c.py)

MSstatsPTM output file

@fcyu I think he is asking about PTM not TMT @lyons89 I haven't tested our outputs with MSstatsPTM

MSstatsPTM output file

The modifications column for now is empty because I'm preparing that one for the MSstatsPTM. For other Msstats, you need to use the Modified.Peptide column, which corresponds to the same...

Process 'PhilosopherFilter' finished, exit code: 2

can you try increasing the protein FDR threshold ?

Quant. tools fail to calculate correct iBAQ values

There's no warning; I just checked the numbers. The problem seems to be here: File: src/openms/source/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.cpp Function: performIbaqNormalization_() (lines 1278-1304)