Felipe da Veiga Leprevost

I tested with v4.4.0

can you send me your log?

the pepXML is the output from MSFragger right? If the file is corrupted, why dont you run Fragger again?

Can you convert your mzML files again using the latest msconvert ?

Can you share the file ?

Sorry I was referring to the raw and mzML files

you forgot to send the database

Actually, that's unnecessary. I took the faulty mzML and converted myself from raw again, and got the same problem; the file does not seem to convert all the way to...

I'll get the link soon, I need to wrap it up some other changes first

@jmcalist , please take the latest RC version from this [link](https://www.dropbox.com/scl/fo/rdk9igzzzzkybz7ro4edg/h?dl=0&rlkey=gzdy0y5zaiudjqdjbwqmkvo0c)