MSstatsPTM output file

[lyons89]

Sorry to bother you again Fengchao. I really like using MSstats and really appreciate the msstats output file you have fragpipe generate. I've seen in the past people have asked about support for MSstatsPTM and I wanted to ask about it again. I think the current issue I'm having is that the msstats.csv output for a TMT experiment doesn't seem to fill out the modifications column. I'm reluctant to bother you about this, and instead can also message the MSstatsPTM team and ask if they can create a fragpipe/philosopher converter using either the mstats.csv or psm.tsv output.

Best, Scott