priya_arasu

Thank you, yes it worked after merging, sorting and indexing the bam files. Is joint variant calling possible using cuteSV?

I could load the glib and could resolve the above error message. I couldn't get a clue about this below error and I checked the permissions to the vcf files,...

I want to create structural variants in the downloaded PacBio data and run it in sv detection pipeline and see if the variant is detected. Is this possible Thank you

Thank you. I have to replace the reference.fasta with the dwonloaded fasta file. Is this right?.

Thank you. So, I did these steps: Simulated the structural variations in the reference genome using the parameters given in package: `./SURVIVOR simSV "/SURVIVOR/Debug/human_GRCh38_no_alt_analysis_set.fasta" "/SV_tools/SURVIVOR/Debug/parameter_file" 0.1 0 simulated` Then simulated...

Sorry, I checked it is Python 3.12.1. Does kage work with this Python version or should I change it Please find the log below: ``` pip install kage-genotyper Collecting kage-genotyper...

I tried with Python 3.8 still couldn't install. Please find the below log: ``` pip install kage-genotyper Collecting kage-genotyper Using cached kage-genotyper-2.0.5.tar.gz (13.0 MB) Preparing metadata (setup.py) ... done Collecting...

Install SharedArray manually first by running CFLAGS="-std=c99" pip install SharedArray (telling the compiler to use c99) and then install kage-genotyper Thank you it worked

Thank you, I could install shared array and install kage-genotyper Priya