Pratibha kadam

Hello there, I am working with AMR data and I am finding CARD very useful. Just need to add AMR genes regarding Bedaquiline. As Bedaquiline is a drug for MDR...

Bedaquiline resistance sequence

1

Hello There, I want to get the bedaquiline resistance gene sequences. Unfortunately the sequences are not present in any of the AMR database. I found mutations but I am not...

Hello There, This is just a problem which I am facing when it comes to the gene. I am looking for resistance genes specially for BDQ drug. Its not there...

ARG-OAP Output file explaination

1

Hello There, 1. I have little doubt about normalized_16s.gene.txt/normalised_16s.subtype.txt/normalised_16s.type.txt The gene names which I can are ARG genes, so, can u just breif me about the 16s files. I thought...

Terminal disappears automatically when runs classification command

2

I have used Kraken2 before on the same 64 GB RAM computer with 16 threads. The drive where the data and output directory are present has more than 300GB of...

same mutation multiple times

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Hello Developers, I have run the MTBseq pipeline for my 6000 TB samples. I noticed that some mutations are repeated in the same .tab file. I don't understand why is...

Dear developers, This is just to increase my understanding on the resistance genes from CARD database. I have downloaded the latest RGI 6.0.3 and I have run RGI bwt as...