Harsh Poddar
Harsh Poddar
conda config --add channels bioconda; conda install drep Warning: 'bioconda' already in 'channels' list, moving to the top Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve....
5 fastas found 2022-07-15 15:49:14.912901: Annotation started 0:00:00.045806: Retrieved database locations and descriptions 0:00:00.045894: Annotating MEGAHIT-group-0.5 0:00:21.937310: Turning genes from prodigal to mmseqs2 db 0:00:23.980066: Getting hits from kofam 0:21:38.160079:...
### Checklist - [X] I added a descriptive title - [X] I searched open reports and couldn't find a duplicate ### Summary I am facing an error while upgrading conda....
 Hello, I am facing this error while running smoove on conda environment could you please add some suggestions to solve this issue. Thanks in advance.
**Have you checked the FAQ? [](https://github.com/google/deepvariant/blob/r1.6.1/docs/deeptrio-wgs-case-study.md) **Describe the issue:** Merging vcf files error. **Setup** - Operating system: working on cluster - DeepVariant version:latest - Installation method (Docker): - Type of...
### Description of the bug [my_param.json](https://github.com/user-attachments/files/15766958/my_param.json) > > error [nextflow.exception.ProcessFailedException]: Process `NFCORE_SAREK:SAREK:FASTQ_ALIGN_BWAMEM_MEM2_DRAGMAP_SENTIEON:DRAGMAP_ALIGN (sample1-lane_1)` terminated with an error exit status (1) > Jun-10 12:48:18.909 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd...
## PR checklist Closes #5784 - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...
Hi, I am trying to learn how to add this new module "`dysgu`" for analysing structural variant in short or long reads in `nf-core/sarek`. ```[tasklist] ### Tasks - [ ]...
Hi @starskyzheng I’m using PanPop under a Conda environment to merge structural variant (SV) VCF files. These VCF files had previously been merged using bcftools as I’m working with multiple...
Hi @lgmgeo I am running AnnotSV on several samples (6 samples) which includes two trios from patients. Does AnnotSV support prioritizing structural variants (SVs) in trio samples, or is there...