pna059

I am using Tusk for Evernote and since the last update the code block is not working. Compared to the previous version, I am missing the button (blue +) enabling...

Hi, I have a genome where regular mapping of data yields 60% multimapped reads. At first, I dealt with that by using HiC-Pro with the RM_MULTI = 0 option. Thank...

Merge interactions fails in FithHiCHIP

1

Hi, I have analyzed Hi-C data using HiC-Pro followed by FitHiChIP with recommended settings. There is a large number of interactions, but at the step of merging adjacent loops, I...

HI, I have processed two replicates of the same experiment. After checking the correlation of the two, I would like to merge them and call loops with higher resolution. At...

Merging replicates

14

Hi, I plan using your tool to analyze HiChIP data (followed by the FithHiChIP tool). At what step and how is it possible to merge replicates (which have been checked...

HiC-Pro and FitHiChIP compatibility

10

Hi, I would like to test including multimappers in my HiChIP datasets which have been analyzed by HiC-Pro and FitHiChIP pipelines before. Can I somehow use .ValidPairs or .allValidPairs from...