pkerbs
pkerbs
Hi Daniel, i have noticed the same issue in version 1.33 for IGH@ locus and MYC. Could you please have a look at it? Thank you. ### IGH@ chr14:105,556,000-106,883,700 (hg38...
Hello, I am trying to run fusioncatcher 1.33 on the samples: SRR5484560 -> https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR5484560 SRR5484561 -> https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR5484561 However they fail at step 101. It seems BBDuk gets confused with N...
Hi, I am trying to plot Cytoband labels on the ideogram. It works if I use the default hg19 genome, but not when I use my own genome region and...
Hello, I just tried the Installation from Bioconda like this: ``` mamba create -n clair3_env -c bioconda clair3 mamba activate clair3_env ``` Unfortunately, there is no `clair.sh` in my environment...
Hi, I tried to install cuteSV via pip and via the git repository, but it failed both times with an error involving PyVCF (see code snippet below). It seems to...
Hi, thank you for your work on this tool. I just wanted to mention that there is no logfile output despite the use of the --logfile parameter My command is:...
Hello, im using `modkit extract` like this: ``` modkit extract \ --reference \ --include-bed \ --threads 16 \ --log-filepath \ \ ``` However, it runs for a very long time...
Hi, i wanted to get the number (fraction) of reads in my samples that contain at least one methylated C. For that I tried using modkit summary on a sample...