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No logfile

Open pkerbs opened this issue 2 years ago • 1 comments

Hi, thank you for your work on this tool. I just wanted to mention that there is no logfile output despite the use of the --logfile parameter My command is:

gunzip -c ${sample_reads} | NanoFilt \
    --headcrop 50 \
    --tailcrop 50 \
    --quality 10 \
    --length 400 \
    --maxlength 700 \
    --logfile ${nanofilt_folder}/${sample_id}.trim.log \
    | gzip > ${nanofilt_folder}/${sample_id}_trimmed.fastq.gz

Best, Paul

pkerbs avatar Nov 18 '22 18:11 pkerbs