nanofilt
nanofilt copied to clipboard
No logfile
Hi, thank you for your work on this tool. I just wanted to mention that there is no logfile output despite the use of the --logfile parameter My command is:
gunzip -c ${sample_reads} | NanoFilt \
--headcrop 50 \
--tailcrop 50 \
--quality 10 \
--length 400 \
--maxlength 700 \
--logfile ${nanofilt_folder}/${sample_id}.trim.log \
| gzip > ${nanofilt_folder}/${sample_id}_trimmed.fastq.gz
Best, Paul