Philipp Rescheneder

You can just attach it here if you press "selecting them" below the text box. Alternatively, please send it to [email protected]. My old university address doesn't work anymore (I'll have...

Hi Brant, thank you very much for the feedback! We'll look into this and fix it in the next version of NextGenMap (which we are planing to release this month)....

Hi, OpenCL is not listed as dependency as NextGenMap comes with the OpenCL libraries included. Without more information I can't comment on why it is not working on your system....

Hi Rob! Thank you very much for the feedback! Yes you are right, truncating the reference without a warning or an error is definitely not the optimal way to handle...

Hi Thomas, thank you very much for your feedback. We will add the option to provide/add read group information in the next version of NextGenMap. If you have any other...

Hi both, thanks for reporting. Could you please try adding: ```threads: 100``` to your config file. That will solve this problem. The nuber (here 100) will be an upper limit....

Ah sorry, I missed in your initial post that you are on Mac. The pipeline is currently not available on Mac because of this reason. There is no Mac version...

Good question, haven't tried it with the linux subsytem for Windows. What about using docker? It's easy to install on a Mac and with a miniconda container (docker run -i...

Hi and thanks for you message. could you please post the full command you used to run pychopper here. Also which version of pychopper you are using. Is it possible...

If you run: ``` pip install git+https://github.com/nanoporetech/pychopper.git ``` you should get the latest version of pychopper that supports gzipped inputs. Best, Philipp