pychopper
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I get following error
Using kit: PCS109
Configurations to consider: "+:SSP,-VNP|-:VNP,-SSP"
Traceback (most recent call last):
File "/group/zhougrp/dguan/nanopore_annotation/Chicken/.snakemake/conda/ec1f5938/bin/cdna_classifier.py", line 336, in
Hi and thanks for you message.
could you please post the full command you used to run pychopper here. Also which version of pychopper you are using.
Is it possible you tried to run pychopper with a zipped fastq file?
Thanks, Philipp
Hi Thanks,
Just trying it with uncompressed fastq file, it works.
Thanks, Dailu
If you run:
pip install git+https://github.com/nanoporetech/pychopper.git
you should get the latest version of pychopper that supports gzipped inputs.
Best, Philipp