Philipp Bayer
Philipp Bayer
Hi, had the same error as @beudes, was inside a conda environment specifically made for roary, I can confirm that manually reinstalling Bio::Roary using cpanm fixes this. On my cluster...
When you forward a 'thank you for reviewing' email to publons they give you a nice line on the status of their job queue, could be something for us? `Your...
This gem could help: https://github.com/utgarda/sidekiq-status
I'm still a bit confused why the PLOS-worker amasses so many jobs in the first place.. I emptied the PLOS queue yesterday, and already there are 7,828 jobs in the...
So I guess it should be better to start these jobs only if the SNP's attributes haven't been updated in a month, like ``` if Date.today - 30.days > (@snp.plos_updated).to_date...
Fixed in f6d13e6649b9657c70f1f8f664cde4cc09fb36df
wait no that's not fixed
It's changed a little bit since then - there's now a `lib/tasks/update_papers.rake` which submits a worker which iterates over all papers and enqueues their job (Mendeley, Plos, Snpedia) when they...
That sounds good and shouldn't be too hard to implement - something living at https://opensnp.org/genotypes.json and just printing all genotypes with date uploaded, associated user ID, genotype ID, and URL...
If it has to happen now, the users JSON already includes all genotypings too: http://opensnp.org/users.json You'd just have to iterate over each user, via https://github.com/openSNP/snpr/wiki/JSON-API